This exactly. Changing the throttle tables will change feel and response, but provided you still drive based on how the car actually accelerates, your economy should be similar.
If you set the tables more aggressively, you need less throttle application to get the same torque, and if you don't adjust your pedal habits because of it, your economy will suffer.
If you relax the tables, you can vary your pedal more, but you might lose the "snappy" feel to the car. This also makes it harder to control your power as you'll have to ramp up your high end more, which if you track the car may cause you some hassle trying to put the car directly on edge around a corner. This is probably why the Cobb OTS maps use a linear throttle, as it allows for a more predictable throttle response in these conditions.